PLUMED Builder
Select residues and generate plumed.dat templates for WT-MetaD presets.
Upload PDB to select residues by chain.
plumed.dat
NDX_GROUP_A: GROUP NDX_GROUP=NDX_GROUP_A NDX_GROUP_B: GROUP NDX_GROUP=NDX_GROUP_B dist: DISTANCE ATOMS=NDX_GROUP_A,NDX_GROUP_B metad: METAD ARG=dist PACE=500 HEIGHT=1.2 SIGMA=0.1 BIASFACTOR=10 TEMP=300 GRID_MIN=0.2 GRID_MAX=2 GRID_BIN=200 PRINT ARG=dist,metad.bias STRIDE=500 FILE=COLVAR